<?xml version="1.0" encoding="UTF-8" ?>
<rss version="2.0">
    <channel>
      <title>Bioinformathics algorithms</title>
      <link>https://andrea-bonari.github.io/bioinformatics-algorithms</link>
      <description>Ultime 10 note on Bioinformathics algorithms</description>
      <generator>Quartz -- quartz.jzhao.xyz</generator>
      <item>
    <title>Introduction to the course</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Introduction-to-the-course</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Introduction-to-the-course</guid>
    <description><![CDATA[ Teaching objectives Bioinformatics represents an application domain of increasing interest and importance for computer science. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Bioinformatics</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Bioinformatics</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Bioinformatics</guid>
    <description><![CDATA[  Note Bioinformatics is the combination of biology and informatics (not to be confused with computer science). ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Genome assembly</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Genome-assembly</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Genome-assembly</guid>
    <description><![CDATA[  Note Genome assembly consists in reconstructing the genome from short sequencing reads. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Multiple sequence alignment</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Multiple-sequence-alignment</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Multiple-sequence-alignment</guid>
    <description><![CDATA[  Note Many applications (especially in the field of evolutionary genetics/genomics) it’s useful to align multiple sequences to each other at the same time. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Sequence alignment</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Sequence-alignment</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Sequence-alignment</guid>
    <description><![CDATA[  Note A sequence alignment is an intuitive overview of differences between two strings. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Sequence modeling</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Sequence-modeling</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Sequence-modeling</guid>
    <description><![CDATA[  Note We need to model DNA sequences to do things such as make some hypotheses about it, build a generative model to descrive it or find sequences of similar type (in terms of characteristics). ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Sequences</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Sequences</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Sequences</guid>
    <description><![CDATA[  Note Information is usually encoded in living cells in the form of sequences, such as DNA, RNA and protein sequences. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Read mapping</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Variant-calling/Read-mapping</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Variant-calling/Read-mapping</guid>
    <description><![CDATA[  Note Considering DNA sequencing data (WGS or ES), referenced-base assembly often follows the goal of finding the differences between an individual’s genome and the reference genome for the corresponding species, rather than characterising the genome of that species in the first place. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>Variant calling</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Variant-calling/Variant-calling</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/Molecular-Biology/Sequences/Variant-calling/Variant-calling</guid>
    <description><![CDATA[  Note Variant calling is one of the key challenges in many areas of genomics research and diagnostics. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item><item>
    <title>index</title>
    <link>https://andrea-bonari.github.io/bioinformatics-algorithms/</link>
    <guid>https://andrea-bonari.github.io/bioinformatics-algorithms/</guid>
    <description><![CDATA[ The course introduces computational biology and bioinformatics, starting with a brief biological background covering cells, DNA, RNA, proteins, and sequencing techniques. ]]></description>
    <pubDate>Sat, 13 Jun 2026 12:43:03 GMT</pubDate>
  </item>
    </channel>
  </rss>